전자저널 > 전자저널 > PANM DB ver 3.0 : An update of the bioinformatics database for annotation of large datasets from sequencing of species under Protostomia clade

PANM DB ver 3.0 : An update of the bioinformatics database for annotation of large datasets from sequencing of species under Protostomia clade

Se Won Kang, So Young Park, Hee Ju Hwang, Jong Min Chung, Min Kyu Sang, Hye Rin Min, Jie Eun Park, Hang Chul Cho, Bharat Bhusan Patnaik and Yong Seok Lee

Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup, Jeonbuk 56212, Korea Biodiversity Research Team, Nakdonggang National Institute of Biological Resources, Sangju, Gyeongbuk 37242, Korea Department of Life Sc

The PANM Database (Protostome DB) was constructed for the first in the year 2015. The aim of the construction was to provide a public platform for researchers to efficiently annotate the next-generation sequencing (NGS) data arising out of genome sequencing projects of species belonging to Arthropoda, Mollusca, and Nematoda (Protostome group). The web-based interface has paramount importance in improving the process of sequencing data with a greater number of noteworthy hits. In the subsequent year, we released an update to the database (PANM-DB v1.0) that contained twice the number of protein sequences (7,571,246) as compared to the original database and the inclusion of Cephalopod sequences. We now release the third database update (PANM-DB v3) with the incorporation of 11,615,243 protein sequences. The size of PANM-DB v3 is smaller, only 6% of NCBI nr database, and significantly reduces the NGS data annotation time. Like the previous versions of the database, PANM-DB v3 is freely downloadable from http://panm.sch.ac.kr/ for local BLAST analysis.

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